From: Robust multi-group gene set analysis with few replicates
Compared methods | Permutation type | Descriptions | |
---|---|---|---|
mGSZm | sample | mGSZ from R package mGSZ updated with Perm4 | |
mGSA | sample | Gene Set Z-score based gene set analysis method similar to GSA [17] | |
Allez | parametric | Allez from R package allez [14] | |
wKS | sample | wKS from R package mGSZ [16] | |
GAGE | parametric | Generally applicable gene set enrichment from R package gage [21] | |
CAMERA | parametric | Correlation adjusted mean rank gene set test from R package limma [13] | |
QuSAGE | parametric | Quantitative set analysis of gene expression from R package qusage [22] | |
romer | sample | Rotation testing using mean ranks from R package limma [24, 25] |