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Table 2 Comparison between original and assembled transcriptomes derived from simulated reads generated from D. melanogaster and C. elegans datasets

From: Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

Organism

Assembler

Original transcripts

Assembled transcripts

Total number

Lacking a BLASTn hit in assembled transcripts

Total number

Lacking a BLASTn hit in original transcripts

D. melanogaster

Concatenated

11,856

1,277 (11%)

12,273

2,685 (22%)

CLC

2,513 (21%)

8,113

1,972 (24%)

IDBA_tran

1,775 (15%)

8,282

1,150 (14%)

Trinity

1,843 (16%)

11,395

2,810 (25%)

C. elegans

Concatenated

16,513

4,774 (29%)

14,922

4,087 (27%)

CLC

5,614 (34%)

11,853

2,948 (25%)

IDBA_tran

5,018 (30%)

11,069

1,557 (14%)

Trinity

5,473 (33%)

12,843

2,869 (22%)