Table 1 The 20 benchmark microarray datasets of different types and different species
GEO Dataset | Size | Type | Organism | Title |
|---|---|---|---|---|
GDS3323 [27] | 45101x6 | Non-time series | Mus musculus | Na+/H+ exchanger 3 deficiency effect on the colon |
GDS3215 [28] | 12625x6 | Non-time series | Homo sapiens | 13-cis retinoic acid effect on SEB-1 sebocyte cell line |
GDS3485 [29] | 45011x6 | Non-time series | Mus musculus | Zinc transporter SLC39A13 deficiency effect on chondrocytes |
GDS3476 [30] | 45011x6 | Non-time series | Mus musculus | NF-E2-related factor 2 Nrf2 activation effect on the liver |
GDS3197 [31] | 45101x6 | Non-time series | Mus musculus | Transcriptional coactivator PGC-1beta hypomorphic mutation effect on the liver |
GDS3149 [32] | 45101x6 | Non-time series | Mus musculus | Suppressor of cytokine signaling 3 deficiency effect on the regenerating liver |
GDS2107 [33] | 15923x6 | Non-time series | Rattus norvegicus | Long-term ethanol consumption effect on pancreas |
GDS3464 [34] | 15617x6 | Non-time series | Danio rerio | SPT5 mutant embryos |
GDS3426 [35] | 23015x6 | Non-time series | Staphylococcus epidermidis | Staphylococcus epidermidis SarZ mutant |
GDS3421 [36] | 10208x6 | Non-time series | Escherichia coli | Frag1 cells response to ionic and non-ionic hyperosmotic stress |
GDS3360 [37] | 22575x8 | Time series | Homo sapiens | Chlamydia pneumoniae infection effect on HL epithelial cells: time course |
GDS2863 [38] | 31099x6 | Time series | Rattus norvegicus | Tienilic acid effect on the liver: time course |
GDS5057 [39] | 34760x8 | Time series | Mus musculus | Mepenzolate bromide effect on lung: time course |
GDS5055 [40] | 45307x10 | Time series | Mus musculus | Histone demethylase KDM1A deficiency effect on 3Â T3-L1 preadipocytes: time course |
GDS3428 [41] | 22283x9 | Time series | Homo sapiens | Immature dendritic cell response to butanol fraction of Echinacea purpurea: time course |
GDS4484 [42] | 45101x8 | Time series | Mus musculus | Cerebellar neuronal cell response to thyroid hormone: time course |
GDS3785 [43] | 17589x8 | Time series | Homo sapiens | Osteoarthritic chondrocytes and healthy mesenchymal stem cell during chondrogenic differentiation: time course |
GDS3930 [44] | 8799x9 | Time series | Rattus norvegicus | Bone morphogenic protein effect on cultured sympathetic neurons: time course |
GDS4321 [45] | 10208x8 | Time series | Escherichia coli | Escherichia coli O157:H7 response to cinnamaldehyde: time course |
GDS3032 [46] | 22277x8 | Time series | Homo sapiens | Quercetin effect on intestinal cell differentiation in vitro: time course |