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Fig. 2 | BMC Bioinformatics

Fig. 2

From: GenomeCAT: a versatile tool for the analysis and integrative visualization of DNA copy number variants

Fig. 2

Graphical User Interphase of GenomeCAT in the Single View mode. Array CGH results for part of chromosome 6 in a patient with cutaneous T-cell lymphoma are depicted as familiar ratio plot together with a track highlighting the aberrant segments as detected by CBS analysis (black bars). Additionally, oligos with ratios beyond custom-defined thresholds are coloured in red and green, respectively. Note that chromosomal breakpoints correlate with transition from gene rich to gene poor regions as visualized by annotation track C right to the chromosome ideogram

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