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Table 5 Predicted RDDs for each treatment of HEK-293 cells. Fraction of AG RNA editing sites is provided in parenthesis

From: JACUSA: site-specific identification of RNA editing events from replicate sequencing data

 

gDNA vs. treatment

Variant caller

untreated

siADAR

siAPOBEC3

SAMtools/BCFtools

11,191 (93.3%)

2117 (68.9%)

6423 (92%)

MuTect

7605 (92.5%)

1793 (69.4%)

4181 (90.2%)

REDItools

11,900 (90.1%)

2729 (59.7%)

6985 (88.6%)

JACUSA

15,461 (92.2%)

3371 (68.3%)

8722 (91.2%)