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Table 5 Predicted RDDs for each treatment of HEK-293 cells. Fraction of AG RNA editing sites is provided in parenthesis

From: JACUSA: site-specific identification of RNA editing events from replicate sequencing data

  gDNA vs. treatment
Variant caller untreated siADAR siAPOBEC3
SAMtools/BCFtools 11,191 (93.3%) 2117 (68.9%) 6423 (92%)
MuTect 7605 (92.5%) 1793 (69.4%) 4181 (90.2%)
REDItools 11,900 (90.1%) 2729 (59.7%) 6985 (88.6%)
JACUSA 15,461 (92.2%) 3371 (68.3%) 8722 (91.2%)