Table 8 Comparison of average editing levels of RNA editing sites that have been identified as RRDs in siADAR and siAPOBEC3 (siApo) treated HEK-293 cells
From: JACUSA: site-specific identification of RNA editing events from replicate sequencing data
Variant | RRDs in | Covered | Homozygous | A→G | Avg. Editing level |
|---|---|---|---|---|---|
caller | siADAR vs. siApo | in gDNA | in gDNA | Editing Sites | siADAR < siApo |
SAMtools | 6368 | 6026 (94.6%) | 4088 (67.8%) | 3838 (93.9%) | 3731 (97.2%) |
JACUSA | 5366 | 5161 (96.2%) | 4284 (83.0%) | 4051 (94.6%) | 4043 (99.8%) |