From: Accelerating metagenomic read classification on CUDA-enabled GPUs
CPU threads | GPUs | HiSeq Speed | MiSeq Speed | wgsim200 Speed | wgsim250 Speed | art454 Speed | fqIon Speed | |
---|---|---|---|---|---|---|---|---|
CLARK | 1 | - | 1.89 | 0.88 | 0.68 | 0.54 | 0.29 | 0.74 |
CLARK | 16 | - | 15.74 | 9.74 | 8.15 | 6.82 | 4.05 | 9.47 |
Kraken | 1 | - | 2.37 | 1.33 | 1.15 | 0.89 | 0.64 | 1.32 |
Kraken | 16 | - | 12.6 | 13.74 | 14.45 | 11.95 | 8.75 | 15.48 |
cuCLARK | 8 | 1 | 49.69 | 42.27 | 38.02 | 34.5 | 26.84 | 41.01 |
cuCLARK/CLARK | 3.2 | 4.3 | 4.7 | 5.1 | 6.6 | 4.3 | ||
cuCLARK/Kraken | 3.9 | 3.1 | 2.6 | 2.9 | 3.1 | 2.7 |