From: Accelerating metagenomic read classification on CUDA-enabled GPUs
CPU threads | GPUs | HiSeq Speed | MiSeq Speed | wgsim200 Speed | wgsim250 Speed | art454 Speed | fqIon Speed | |
---|---|---|---|---|---|---|---|---|
CLARK | 1 | - | 1.66 | 0.75 | 0.65 | 0.51 | 0.26 | 0.68 |
CLARK | 16 | - | 13.46 | 8.96 | 8.07 | 6.52 | 3.9 | 9.4 |
Kraken | 1 | - | 2.37 | 1.33 | 1.15 | 0.89 | 0.64 | 1.32 |
Kraken | 16 | - | 12.6 | 13.74 | 14.45 | 11.95 | 8.75 | 15.48 |
cuCLARK | 8 | 1 | 49.27 | 41.22 | 37.23 | 33.89 | 25.13 | 39.93 |
cuCLARK/CLARK | 3.7 | 4.6 | 4.6 | 5.2 | 6.4 | 4.2 | ||
cuCLARK/Kraken | 3.9 | 3 | 2.6 | 2.8 | 2.9 | 2.6 |