From: Accelerating metagenomic read classification on CUDA-enabled GPUs
HiSeq | CPU threads | GPUs | Speed | RAM usage | GRAM usage |
---|---|---|---|---|---|
CLARK (s=1) | 16 | - | 15.74 | 86.5 GB | - |
CLARK (s=6) | 16 | - | 24.8 | 34.7 GB | - |
Kraken | 16 | - | 12.6 | 73.8 GB | - |
cuCLARK (s=1) | 1 | 1 | 44.26 | 39.9 GB | 9.7 GB |
cuCLARK (s=1) | 8 | 1 | 49.69 | 39.9 GB | 9.7 GB |
cuCLARK (s=6) | 1 | 1 | 60.51 | 14.1 GB | 11.9 GB |
cuCLARK (s=6) | 8 | 1 | 75.96 | 14.1 GB | 11.9 GB |