Table 4 Classification speed comparison between CLARK light and cuCLARK light at species-level in terms of 106 classified sequences/min
From: Accelerating metagenomic read classification on CUDA-enabled GPUs
CPU threads | GPUs | HiSeq Speed | MiSeq Speed | wgsim200 Speed | wgsim250 Speed | art454 Speed | fqIon Speed | |
|---|---|---|---|---|---|---|---|---|
CLARK light | 1 | - | 5.85 | 3.06 | 2.64 | 2.08 | 1.08 | 2.66 |
CLARK light | 16 | - | 27.32 | 19.48 | 16.47 | 13.95 | 8.21 | 18.45 |
cuCLARK light | 8 | 1 | 75.46 | 69.76 | 62.62 | 59.23 | 54.12 | 65.27 |
cuCLARK light/CLARK light | 2.8 | 3.6 | 3.8 | 4.2 | 6.6 | 3.5 |