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Table 2 Univariate GWAS meta-analysis of lipid traits and BMI at lead SNPs in 1,441 individuals from the Estonian Genome Center, University of Tartu

From: SCOPA and META-SCOPA: software for the analysis and aggregation of genome-wide association studies of multiple correlated phenotypes

Locus

Lead SNP

Chr

Positiona (bp)

Alleles

BMI

HDL

LDL

TG

    

Effect

Other

Effect (SE)

p-value

Effect (SE)

p-value

Effect (SE)

p-value

Effect (SE)

p-value

APOE

rs7412

19

45,412,079

T

C

−0.018 (0.011)

0.41

−0.015 (0.011)

0.55

0.107 (0.011)

1.9×10−23

−0.025 (0.011)

0.093

CETP

rs56156922

16

56,987,369

C

T

−0.007 (0.017)

0.99

−0.105 (0.016)

6.1×10−10

0.040 (0.017)

0.062

0.032 (0.017)

0.19

GPC5

rs71427535

13

92,826,439

C

T

−0.003 (0.011)

1.0

0.038 (0.011)

0.0012

0.006 (0.011)

0.96

−0.063 (0.011)

1.3×10−8

LIPC

rs2043085

15

58,680,954

T

C

−0.009 (0.019)

0.98

−0.093 (0.018)

6.5×10−7

−0.005 (0.018)

1.0

−0.019 (0.018)

0.74

  1. Chr: chromosome. SE: standard error
  2. aPosition reported for NCBI build GRCh37 (UCSC hg19 assembly)