TTCA: an R package for the identification of differentially expressed genes in time course microarray data

BMC Bioinformatics

Table 1 Compendious result table. The instability of SNORA11 is confirmed and the effect size is high, which indicates a false positive result. The plotted SNORA11 profile in Fig. 4 confirms this suspicion. The effect size of the peak score covers up to 26% of the detection range

Consensus rank	Gene name	Consensus score	Consensus score p-value	PubMed	Instability score	Effect size of peak score
1	CTGF	1.00	3.57E-05	73	0.009	0.26
2	EGR1	0.91	7.25E-05	101	0.006	0.23
3	SNORA11	0.62	8.18E-04	0	0.038	0.26
4	PTGS2	0.59	0.001	804	0.009	0.10
5	JUN	0.58	0.001	6789	0.005	0.11
6	GLIPR1	0.57	0.001	0	0.006	0.13
7	FOS	0.55	0.002	920	0.002	0.14
8	AREG	0.53	0.002	549	0.006	0.10
13	MIR4320	0.44	0.005	0	0.016	0.15
15	F3	0.44	0.006	65	0.011	0.10
19	IL8	0.41	0.007	43	0.018	0.13
20	EGR2	0.41	0.008	7	0.005	0.12
21	PCNA	0.40	0.009	583	0.003	0.03
29	DUSP5	0.37	0.013	4	0.012	0.10
36	MYC	0.34	0.017	984	0.002	0.06
37	ROS1	0.34	0.017	84	0.005	0.03
38	HIF1A	0.34	0.017	185	0.007	0.08
42	MIR554	0.34	0.018	0	0.004	0.15
45	IL24	0.32	0.022	0	0.003	0.06
49	TGFB2	0.31	0.025	121	0.008	0.04
51	TGFB1	0.30	0.027	887	0.004	0.03
52	JUNB	0.30	0.028	54	0.008	0.05

ISSN: 1471-2105