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Table 4 Performance of the hybrid MPI+OpenMP saCeSS and scalability analysis when the number of processors grows (Continued)

From: Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy

B5

10-eSS

10

16 ±4

69448 ±14570

901±197

-

 

saCeSS

10 (10 x 1)

10 ±3

51076 ±12696

658±174

1.37

 

saCeSS

10 (5 x 2)

11 ±3

36090 ±8761

520±136

1.73

 

20-eSS

20

11 ±2

106051 ±17602

685±127

-

 

saCeSS

20 (20 x 1)

10 ±2

99995 ±21070

654±151

1.05

 

saCeSS

20 (10 x 2)

9 ±2

52419 ±12040

368±92

1.86

 

saCeSS

20 (5 x 4)

10 ±3

38427 ±10523

331±97

2.07

 

40-eSS

40

10 ±2

192192 ±29082

618±102

-

 

saCeSS

40 (40 x 1)

8 ±2

161687 ±40392

514±138

1.20

 

saCeSS

40 (20 x 2)

9 ±2

100315 ±17758

350±68

1.76

 

saCeSS

40 (10 x 4)

11 ±2

64594 ±13173

280±61

2.21

 

saCeSS

40 (5 x 8)

11 ±3

45854 ±11607

248±67

2.48

  1. Execution time and speedup results. Stopping criteria: VTR B1=1.3753×104, VTR B2=2.50×102, VTR B3=3.7×10−1, VTR B4=55, VTR B5=4.2×103, VTR B6=1.0833×105