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Table 5 Total running times for running MC-GenomeKey on the whole genome dataset using different clusters of increasing node number

From: MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants

  Nodes
  4 8 16 32
Alignment (BWA) 8:03:53 4:45:51 2:55:34 1:30:22
IndelRealigner 3:04:03 1:25:44 0:50:51 0:28:44
MarkDuplicates 3:15:04 1:35:01 0:48:15 0:33:10
BQSR 4:11:14 2:55:16 1:35:02 0:18:41
HaplotypeCaller 9:05:43 6:04:45 4:18:30 2:15:01
GenotypeGVCFs 1:45:01 1:01:10 0:37:14 0:15:09
VQSR 1:33:29 0:55:45 0:30:56 0:11:30
Merge VCF 0:05:55 0:08:39 0:11:20 0:13:15
Convert VCF to Annovar 0:06:14 0:07:11 0:06:59 0:07:01
Annotate 0:15:01 0:14:55 0:15:10 0:14:32
Merge Annotation 0:04:06 0:03:49 0:04:01 0:04:05
Total time 31:29:43 19:18:06 12:13:52 6:11:30