TY - JOUR AU - Cun, Y. AU - Frohlich, H. PY - 2014 DA - 2014// TI - netClass: an R-package for network based, integrative biomarker signature discovery JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu025 DO - 10.1093/bioinformatics/btu025 ID - Cun2014 ER - TY - JOUR AU - Tusher, V. G. AU - Tibshirani, R. AU - Chu, G. PY - 2001 DA - 2001// TI - Significance analysis of microarrays applied to the ionizing radiation response JO - Proc Natl Acad Sci U S A VL - 98 UR - https://doi.org/10.1073/pnas.091062498 DO - 10.1073/pnas.091062498 ID - Tusher2001 ER - TY - JOUR AU - Kela, I. AU - Ein-Dor, L. AU - Getz, G. PY - 2005 DA - 2005// TI - Outcome signature genes in breast cancer: is there a unique set? JO - Breast Cancer Res VL - 7 UR - https://doi.org/10.1186/bcr1168 DO - 10.1186/bcr1168 ID - Kela2005 ER - TY - JOUR AU - Tomlins, S. A. AU - Rhodes, D. R. AU - Perner, S. PY - 2005 DA - 2005// TI - Recurrent Fusion of TMPRSS2 and ETS Transcription Factor Genes in Prostate Cancer JO - Science VL - 310 UR - https://doi.org/10.1126/science.1117679 DO - 10.1126/science.1117679 ID - Tomlins2005 ER - TY - JOUR AU - Winter, C. AU - Kristiansen, G. AU - Kersting, S. PY - 2012 DA - 2012// TI - Google goes cancer: improving outcome prediction for cancer patients by network-based ranking of marker genes JO - Plos Computational Biology VL - 8 UR - https://doi.org/10.1371/journal.pcbi.1002511 DO - 10.1371/journal.pcbi.1002511 ID - Winter2012 ER - TY - JOUR AU - Cun, Y. AU - Fröhlich, H. PY - 2013 DA - 2013// TI - Network and data integration for biomarker signature discovery via network smoothed T-statistics JO - Plos One VL - 8 UR - https://doi.org/10.1371/journal.pone.0073074 DO - 10.1371/journal.pone.0073074 ID - Cun2013 ER - TY - JOUR AU - Cordell, H. J. PY - 2009 DA - 2009// TI - Detecting gene-gene interactions that underlie human diseases JO - Nat Rev Genet VL - 10 UR - https://doi.org/10.1038/nrg2579 DO - 10.1038/nrg2579 ID - Cordell2009 ER - TY - JOUR AU - Freimer, N. B. AU - Sabatti, C. PY - 2007 DA - 2007// TI - Human genetics: variants in common diseases JO - Nature VL - 445 UR - https://doi.org/10.1038/nature05568 DO - 10.1038/nature05568 ID - Freimer2007 ER - TY - JOUR AU - Thomas, D. PY - 2010 DA - 2010// TI - Gene-environment-wide association studies: emerging approaches JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2764 DO - 10.1038/nrg2764 ID - Thomas2010 ER - TY - JOUR AU - Zheng, G. AU - Zhang, T. AU - Xia, L. PY - 2005 DA - 2005// TI - Towards precise classification of cancers based on robust gene functional expression profiles JO - Bmc Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-243 DO - 10.1186/1471-2105-6-243 ID - Zheng2005 ER - TY - JOUR AU - Lee, E. AU - Chuang, H. Y. AU - Kim, J. W. PY - 2008 DA - 2008// TI - Inferring pathway activity toward precise disease classification JO - Plos Computational Biology VL - 4 UR - https://doi.org/10.1371/journal.pcbi.1000217 DO - 10.1371/journal.pcbi.1000217 ID - Lee2008 ER - TY - JOUR AU - Hänzelmann, S. AU - Castelo, R. AU - Guinney, J. PY - 2013 DA - 2013// TI - GSVA: gene set variation analysis for microarray and RNA-Seq data JO - Bmc Bioinformatics VL - 14 UR - https://doi.org/10.1186/1471-2105-14-7 DO - 10.1186/1471-2105-14-7 ID - Hänzelmann2013 ER - TY - JOUR AU - Drier, Y. AU - Sheffer, M. AU - Domany, E. PY - 2013 DA - 2013// TI - Pathway-based personalized analysis of cancer JO - Proc Natl Acad Sci U S A VL - 110 UR - https://doi.org/10.1073/pnas.1219651110 DO - 10.1073/pnas.1219651110 ID - Drier2013 ER - TY - JOUR AU - Cun, Y. AU - Fröhlich, H. PY - 2012 DA - 2012// TI - Biomarker gene signature discovery integrating network knowledge JO - Biology VL - 1 UR - https://doi.org/10.3390/biology1010005 DO - 10.3390/biology1010005 ID - Cun2012 ER - TY - JOUR AU - Blazadonakis, M. E. AU - Zervakis, M. E. AU - Kafetzopoulos, D. PY - 2011 DA - 2011// TI - Integration of gene signatures using biological knowledge JO - Artif Intell Med VL - 53 UR - https://doi.org/10.1016/j.artmed.2011.06.003 DO - 10.1016/j.artmed.2011.06.003 ID - Blazadonakis2011 ER - TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology. The Gene Ontology Consortium JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Harris, M. A. AU - Clark, J. AU - Ireland, A. PY - 2004 DA - 2004// TI - The Gene Ontology (GO) database and informatics resource JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh066 DO - 10.1093/nar/gkh066 ID - Harris2004 ER - TY - JOUR AU - Chuang, H. AU - Lee, E. AU - Liu, Y. T. PY - 2007 DA - 2007// TI - Network-based classification of breast cancer metastasis JO - Mol Syst Biol VL - 3 UR - https://doi.org/10.1038/msb4100180 DO - 10.1038/msb4100180 ID - Chuang2007 ER - TY - JOUR AU - He, D. AU - Liu, Z. P. AU - Chen, L. PY - 2011 DA - 2011// TI - Identification of dysfunctional modules and disease genes in congenital heart disease by a network-based approach JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-592 DO - 10.1186/1471-2164-12-592 ID - He2011 ER - TY - JOUR AU - Wen, Z. AU - Liu, Z. P. AU - Liu, Z. PY - 2013 DA - 2013// TI - An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer JO - J Am Med Inform Assoc Jamia VL - 20 UR - https://doi.org/10.1136/amiajnl-2012-001168 DO - 10.1136/amiajnl-2012-001168 ID - Wen2013 ER - TY - JOUR AU - Zeng, T. AU - Zhang, W. W. AU - Xiangtian, Y. U. PY - 2014 DA - 2014// TI - Edge biomarkers for classification and prediction of phenotypes JO - Sci China VL - 57 UR - https://doi.org/10.1007/s11427-014-4757-4 DO - 10.1007/s11427-014-4757-4 ID - Zeng2014 ER - TY - JOUR AU - Zeng, T. AU - Zhang, C. C. AU - Zhang, W. PY - 2014 DA - 2014// TI - Deciphering early development of complex diseases by progressive module network JO - Methods VL - 67 UR - https://doi.org/10.1016/j.ymeth.2014.01.021 DO - 10.1016/j.ymeth.2014.01.021 ID - Zeng2014 ER - TY - JOUR AU - Casanova, R. AU - Saldana, S. AU - Chew, E. Y. PY - 2014 DA - 2014// TI - Application of random forests methods to diabetic retinopathy classification analyses JO - Plos One VL - 9 UR - https://doi.org/10.1371/journal.pone.0098587 DO - 10.1371/journal.pone.0098587 ID - Casanova2014 ER - TY - JOUR AU - Zhou, H. AU - Meng, A. AU - Long, Y. PY - 2014 DA - 2014// TI - Classification and comparison of municipal solid waste based on thermochemical characteristics JO - J Air Waste Manage Assoc VL - 64 UR - https://doi.org/10.1080/10962247.2013.873094 DO - 10.1080/10962247.2013.873094 ID - Zhou2014 ER - TY - JOUR AU - Li, Q. AU - Qishuo, G. AU - Zhang, G. PY - 2014 DA - 2014// TI - Classification for breast cancer diagnosis with Raman spectroscopy JO - Biomedical Optics Express VL - 5 UR - https://doi.org/10.1364/BOE.5.002435 DO - 10.1364/BOE.5.002435 ID - Li2014 ER - TY - JOUR AU - Taneera, J. AU - Lang, S. AU - Sharma, A. PY - 2012 DA - 2012// TI - A Systems Genetics Approach Identifies Genes and Pathways for Type 2 Diabetes in Human Islets JO - Cell Metab VL - 16 UR - https://doi.org/10.1016/j.cmet.2012.06.006 DO - 10.1016/j.cmet.2012.06.006 ID - Taneera2012 ER - TY - JOUR AU - Gallagher, I. J. AU - Scheele, C. AU - Keller, P. PY - 2010 DA - 2010// TI - Integration of microRNA changes in vivo, identifies novel molecular features of muscle insulin resistance in type 2 diabetes JO - Genome Med VL - 2 UR - https://doi.org/10.1186/gm130 DO - 10.1186/gm130 ID - Gallagher2010 ER - TY - JOUR AU - Cui, J. AU - Chen, Y. AU - Chou, W. C. PY - 2010 DA - 2010// TI - An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq960 DO - 10.1093/nar/gkq960 ID - Cui2010 ER - TY - JOUR AU - Levy, H. AU - Wang, X. AU - Kaldunski, M. PY - 2012 DA - 2012// TI - Transcriptional Signatures as a Disease-Specific and Predictive Inflammatory Biomarker for Type 1 Diabetes JO - Genes Immun VL - 13 UR - https://doi.org/10.1038/gene.2012.41 DO - 10.1038/gene.2012.41 ID - Levy2012 ER - TY - JOUR AU - Guyon, I. AU - Weston, J. AU - Barnhill, S. PY - 2002 DA - 2002// TI - Gene selection for cancer classification using support vector machines JO - Mach Learn VL - 46 UR - https://doi.org/10.1023/A:1012487302797 DO - 10.1023/A:1012487302797 ID - Guyon2002 ER - TY - JOUR AU - Rebhan, M. AU - Chalifacaspi, V. AU - Prilusky, J. PY - 1998 DA - 1998// TI - GeneCards:a novel functional genomics compendium with automated data mining and query reformulation support JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.8.656 DO - 10.1093/bioinformatics/14.8.656 ID - Rebhan1998 ER - TY - JOUR AU - Reimand, J. AU - Kull, M. AU - Peterson, H. PY - 2007 DA - 2007// TI - Vilo J: g:Profiler–a web-based toolset for functional profiling of gene lists from large-scale experiments JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm226 DO - 10.1093/nar/gkm226 ID - Reimand2007 ER - TY - JOUR AU - Jambal, P. AU - Masterson, S. AU - Nesterova, A. PY - 2003 DA - 2003// TI - Cytokine-mediated down-regulation of the transcription factor cAMP-response element-binding protein in pancreatic beta-cells JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M212450200 DO - 10.1074/jbc.M212450200 ID - Jambal2003 ER - TY - JOUR AU - Xiao, J. AU - Li, J. AU - Cai, L. PY - 2014 DA - 2014// TI - Cytokines and diabetes research JO - J Diabetes Res VL - 2014 UR - https://doi.org/10.1155/2014/920613 DO - 10.1155/2014/920613 ID - Xiao2014 ER - TY - JOUR AU - Kikodze, N. AU - Pantsulaia, I. AU - Kh, R. PY - 2013 DA - 2013// TI - Cytokines and T regulatory cells in the pathogenesis of type 1 diabetes JO - Georgian Med News VL - 222 ID - Kikodze2013 ER - TY - JOUR AU - Ovcinnikovs, V. AU - Walker, L. S. PY - 2015 DA - 2015// TI - Regulatory T cells in autoimmune diabetes: mechanisms of action and translational potential JO - Prog. Mol. Biol. Transl. Sci. VL - 136 UR - https://doi.org/10.1016/bs.pmbts.2015.08.004 DO - 10.1016/bs.pmbts.2015.08.004 ID - Ovcinnikovs2015 ER - TY - JOUR AU - Gregori, S. AU - Battaglia, M. AU - Roncarolo, M. PY - 2008 DA - 2008// TI - Re-establishing immune tolerance in type 1 diabetes via regulatory T cells JO - Novartis Found Symp VL - 292 UR - https://doi.org/10.1002/9780470697405.ch16 DO - 10.1002/9780470697405.ch16 ID - Gregori2008 ER - TY - JOUR AU - Rønn, S. G. AU - Billestrup, N. AU - Mandruppoulsen, T. PY - 2007 DA - 2007// TI - Diabetes and suppressors of cytokine signaling proteins JO - Diabetes VL - 56 UR - https://doi.org/10.2337/db06-1068 DO - 10.2337/db06-1068 ID - Rønn2007 ER - TY - JOUR AU - Zhang, C. AU - Wang, J. AU - Zhang, C. PY - 2016 DA - 2016// TI - Network stratification analysis for identifying function-specific network layers JO - Mol Biosystems VL - 12 UR - https://doi.org/10.1039/C5MB00782H DO - 10.1039/C5MB00782H ID - Zhang2016 ER -