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Table 2 Overlaps of deletion predictions of the four SV detection algorithms with golden standard deletions in Mills el. al. 2011

From: Pysim-sv: a package for simulating structural variation data with GC-biases

Software Total reported deletion Deletions in golden standard Precision Recall rate
Delly 1075 358/545 0.33 0.66
BreakDancer 779 328/545 0.42 0.60
Gasv-pro 1382 339/545 0.25 0.62
Meerkat 687 372/545 0.54 0.68