From: Pysim-sv: a package for simulating structural variation data with GC-biases
Simulation set up | Time | Memory | |
---|---|---|---|
Genome Simulationa | One subclone with 100 SVs | 0.98 h | 9.1 Gb |
 | One subclone with 200 SVs | 1.34 h | 9.9 Gb |
 | One subclone with 300 SVs | 1.73 h | 11.6 Gb |
 | Two subclones with 100 SVs | 1.03 h | 9.5 Gb |
 | Three subclones with 100 SVs | 1.28 h | 10.2 Gb |
Read generationb | Mixing reads from 2 subclones and 1 normal genome (392 M reads) | 2.76 h | 6.2 Gb |
 | GC-bias Introduction (130 M reads) | 4.10 h | 2.5 GB |