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Table 1 Characters per gene partition for each mtDNA data set

From: Visualizing phylogenetic tree landscapes

Gene

Fishes

Mammals

Salamanders

Test

ATP8

939(156)

362(164)

783(162)

768

ND4L

1362(285)

1056(290)

378(279)

271

ND3

690(339)

1559(347)

355(330)

236

COII

444(690)

433(682)

196(681)

121

ATP6

415(657)

540(708)

156(681)

111

COIII

643(783)

554(786)

149(783)

114

12S

256(693)

219(787)

119(809)

107

ND1

507(933)

170(969)

111(957)

107

ND2

371(990)

129(1048)

111(1014)

105

CytB

235(1164)

195(11 s40)

122(1131)

107

16S

205(922)

146(1199)

106(1260)

103

tRNAs

162(1152)

146(1339)

108(1274)

101

ND4

219(1371)

150(1384)

108(1332)

104

COI

386(1539)

228(1542)

106(1548)

102

ND5

188(1632)

114(1801)

103(1734)

102

Total Trees

7022(13,306)

6001(14,186)

3011(13,975)

2559

  1. The number of unique ML bootstrap topologies (100 replicates, GTR + Γ) retained for each of the 15-mtDNA gene partitions for each of the three- mtDNA alignments. The number of nucleotides representing each gene partition is given in parentheses. Gene partitions are sorted in ascending order of their size. Characters for each test partition are selected at random but in proportion to the size of each partition from the original salamander alignment