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Table 2 Clustering accuracy comparison of 2-D dimensionality reduction results by Isomap and Laplacian Eigenmaps

From: Nonlinear dimensionality reduction methods for synthetic biology biobricks’ visualization

 

Isomap

LE

Protein generators and primer

0.97

0.97

Protein generators and protein domains

0.77

0.72

Protein generators and RBS

0.95

0.92

Primer and protein domains

0.86

0.845

Protein domains and RBS

0.81

0.83

Primer and RBS

0.78

0.78

  1. LE denotes Laplacian Eigenmaps