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Table 10 Relevance and exclusivity of BicPAMS’ solutions: properties of some of the found modules in DryGIN

From: BicPAMS: software for biological data analysis with pattern-based biclustering

 

ID

Type

Nodes |I|×|J|

Items

Enriched terms

Details

DryGIN

G1

constant

18 ×9

{-4,..,-1}

27

Module with coherently strong (–4) and soft (–1) negative interactions.

 

G2

symmetric

4 ×9

{-3,..,3}

13

Module with multiple levels of strong (mainly positive) interactions ({ ±3,±2}).

 

G3

symmetric

5 ×6

{-2,-1,1,2}

12

Module with either all negative or positive interactions per “row”-node ({ ±1,±2}).

 

G4

constant

7 ×5

{1,2}

12

Module with coherent strong (2) and soft (1) positive interactions.

 

G5

symmetric

7 ×5

{-2,-1,1,2}

11

Module with either all negative or positive interactions per “row”-node ({ ±1,±2}).

 

G6

order

14 ×11

{-3,..,3}

25

Preserved precedences and co-occurrences per “row”-node before postprocessing.

 

G7

order

42 ×8

{-2,-1,1,2}

50

Noise-tolerant module with mostly preserved orderings per “row”-node.