Skip to main content

Table 10 Relevance and exclusivity of BicPAMS’ solutions: properties of some of the found modules in DryGIN

From: BicPAMS: software for biological data analysis with pattern-based biclustering

  ID Type Nodes |I|×|J| Items Enriched terms Details
DryGIN G1 constant 18 ×9 {-4,..,-1} 27 Module with coherently strong (–4) and soft (–1) negative interactions.
  G2 symmetric 4 ×9 {-3,..,3} 13 Module with multiple levels of strong (mainly positive) interactions ({ ±3,±2}).
  G3 symmetric 5 ×6 {-2,-1,1,2} 12 Module with either all negative or positive interactions per “row”-node ({ ±1,±2}).
  G4 constant 7 ×5 {1,2} 12 Module with coherent strong (2) and soft (1) positive interactions.
  G5 symmetric 7 ×5 {-2,-1,1,2} 11 Module with either all negative or positive interactions per “row”-node ({ ±1,±2}).
  G6 order 14 ×11 {-3,..,3} 25 Preserved precedences and co-occurrences per “row”-node before postprocessing.
  G7 order 42 ×8 {-2,-1,1,2} 50 Noise-tolerant module with mostly preserved orderings per “row”-node.