Skip to main content

Table 7 Illustrative set of biologically relevant biclusters with different properties

From: BicPAMS: software for biological data analysis with pattern-based biclustering

Dataset ID Pattern \(|\mathcal {L}|\) (items) Coherency assumption Postprocessing Genes Conds p−values <0.01 p−values [0.01,0.05] Best p-value
dlbcl B1 FAABFFF 6 (A-F) constant Merging with tight overlapping 83 7 41 21 1.97E-10
  B2 AAAABCAA 3 (A-C) constant Extensions allowed (tight merging) 153 8 9 1 2.27E-12
  B3 AAAAA/../EEEEE 5 (A-E) multiplicative Reducing with high homogeneity 119 5 5 18 4.12E-8
hughes B4 EEECEE 5 (A-E) constant Merging allowed 581 6 12 7 1.31E-25
  B5 CCDCBCBCCC 5 (A-E) constant Merging with relaxed overlapping 654 10 16 4 1.31E-17
  B6 AAAAAA/... 7 (A-G) additive Merging with tight overlapping 476 6 12 10 1.92E-6
gasch B7 AAAGGGA/... 7 (A-G) multiplicative Merging with tight overlapping 483 7 57 10 1.24E-81
  B8 AAABACCCAA/... 5 (A-E) additive Merging allowed 521 10 17 5 4.57E-12