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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Evaluation of logistic regression models and effect of covariates for case–control study in RNA-Seq analysis

Fig. 3

Type-I error rates from logistic regressions of the permuted HD data. Figure 3 contains Type-I error rates from Classical Logistic (CL), Bayes Logistic (BL), Firth’s Logistic (FL) regressions of the permuted HD data at alpha levels of 0.05 and 0.01. Each empty dot represents Type-I error rate of a gene. The dots filled with colors inside of boxes denote average values of Type-I error rates in each category of dispersion groups. The black dotted horizontal lines are our alpha levels. a shows Type-I error rates of genes having mean expression value of greater than 3 at alpha level of 0.05. b displays Type-I error rates of genes having mean expression value of greater than 3 at alpha level of 0.01

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BMC Bioinformatics

ISSN: 1471-2105

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