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Table 2 Diverse motifs of the GCRV proteins predicted to interact with grass carp JAM-A protein

From: Prediction of GCRV virus-host protein interactome based on structural motif-domain interactions

Virus protein name Domain Motif pattern Motif Motif_start Motif_end Motif_length Surface accessibility
Sigma1-like V-set Y..S…D YVGSSSVD 190 198 8 EBBEEEBE
Sigma1-like V-set D.[AGS][FL] DLGL
DGGL DLSL
297
341
350
354
345
354
4
4
4
BEEE
EEBE
EEEE
VP3 V-set N.NG NTNG 1159 1163 4 EEEB
VP4 V-set N.NG NING 11 15 4 BBEE
VP4 V-set N.NG NPNG 41 45 4 BEEB
VP4 V-set N.N.S.H NPNDSAH 532 539 7 EEEEEEE
  1. E exposed residue, and B buried residue