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Table 2 Diverse motifs of the GCRV proteins predicted to interact with grass carp JAM-A protein

From: Prediction of GCRV virus-host protein interactome based on structural motif-domain interactions

Virus protein name

Domain

Motif pattern

Motif

Motif_start

Motif_end

Motif_length

Surface accessibility

Sigma1-like

V-set

Y..S…D

YVGSSSVD

190

198

8

EBBEEEBE

Sigma1-like

V-set

D.[AGS][FL]

DLGL

DGGL DLSL

297

341

350

354

345

354

4

4

4

BEEE

EEBE

EEEE

VP3

V-set

N.NG

NTNG

1159

1163

4

EEEB

VP4

V-set

N.NG

NING

11

15

4

BBEE

VP4

V-set

N.NG

NPNG

41

45

4

BEEB

VP4

V-set

N.N.S.H

NPNDSAH

532

539

7

EEEEEEE

  1. E exposed residue, and B buried residue