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Table 5 Validation sensitivity results using ISVM and TSVM methods for the Scenarios 1 and 2

From: Transductive learning as an alternative to translation initiation site identification

Downstream

Scenario 1

Scenario 2

Window

ISVM (inductive)

TSVM(transdutivo)

ISVM (inductive)

TSVM (transdutivo)

Rattus norvegicus

 

235

81.30±8.20

78.77±4.36

61.63±4.69

72.00±2.73

518

88.00±8.67

91.00±3.33

59.89±6.90

79.67±2.73

800

88.89±4.16

88.89±4.16

34.66±10.69

84.63±2.38

1081

82.50±13.15

85.83±6.55

18.01±14.06

78.42±4.01

1365

79.17±13.71

82.5±7.10

11.41±13.73

75.03±3.37

1650

81.66±10.27

95.00±6.19

7.93±2.63

77.44±3.77

Mus musculus

 

235

83.88±3.94

87.16±0.84

76.93±1.51

84.21±0.45

518

90.97±1.58

92.77±1.50

81.75±1.45

92.36±0.39

800

95.28±2.43

96.97±0.66

78.16±2.35

93.72±0.49

1081

95.70±1.74

97.94±1.18

79.54±1.47

95.53±0.59

1365

96.58±1.58

97.94±1.49

67.05±3.67

96.16±0.78

1650

97.40±2.06

98.35±1.78

65.25±3.94

96.74±0.65

Homo sapiens

 

235

88.72±0.44

82.83±0.33

90.52±0.28

87.42±0.11

518

95.26±0.25

91.92±0.26

95.71±0.08

94.69±0.17

800

97.17±0.20

94.12±0.18

97.53±0.26

96.57±0.08

1081

97.74±0.27

95.89±0.19

97.84±0.23

97.44±0.04

1365

98.31±0.30

96.47±0.13

98.52±0.21

98.09±0.04

1650

98.33±0.35

96.61±0.22

98.60±0.24

98.41±0.07

Drosophila melanogaster

 

235

90.28±0.46

85.98±0.30

91.96±0.34

90.33±0.07

518

94.98±0.23

91.98±0.25

95.38±0.17

94.48±0.06

800

96.38±0.16

93.01±0.17

96.57±0.30

95.54±0.06

1081

96.80±0.38

94.82±0.21

96.76±0.25

96.21±0.08

1365

97.36±0.45

95.38±0.23

97.31±0.18

96.66±0.07

1650

97.32±0.39

94.42±0.28

97.70±0.30

96.57±0.16

Arabidopsis thaliana

 

235

94.74±0.37

93.75±0.27

94.10±0.14

92.76±0.05

518

98.13±0.17

97.50±0.13

97.73±0.09

97.26±0.04

800

99.25±0.10

98.57±0.12

99.01±0.05

98.46±0.04

1081

99.38±0.10

98.94±0.10

99.24±0.06

99.06±0.02

1365

99.48±0.13

99.30±0.14

99.44±0.08

99.32±0.03

1650

99.68±0.18

99.48±0.21

99.44±0.11

99.35±0.08