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Fig. 2 | BMC Bioinformatics

Fig. 2

From: VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

Fig. 2

Screen shot of the “Tree” tab in VMCMC for an MCMC trace obtained from JPrIME on the tetrapod dataset “DS1” collected by Hedges et al. [25] The left panel shows the estimated posterior on trees sorted in descending order of probability, after removing the burn-in selected in the “Graph” panel. The right panel displays either the selected tree or (as in this figure) a consensus tree of multiple selected trees with support values for each edge. The top panel shows the displayed tree in Newick format. The presented consensus tree has five nodes where the top five trees differ. Note that support values are determined only by the selected trees and their probabilities

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