Skip to main content

Table 2 PacBio read set test results

From: Meta-aligner: long-read alignment based on genome statistics

Aligner Commands or parameters Mapping (%) Unique reports (%) Time(sec) Peak memory (GB)
Meta-aligner Estimated parameters 1: 88.99 84.01 24160 27 (flexible)
  \(\left (\ell _{1},d,\mathcal {S}_{1}\right)=\left (25,1,-\right)\)     
Meta-aligner Estimated parameters 2: 97.97 93.37 39041 27 (flexible)
  \(\left (\ell _{1},d,\mathcal {S}_{1}\right)=\left (25,2,5\right)\)     
BWA-SW z=2 90.46 21 1573 22.6 (fixed)
BWA-SW z=10 95.55 19.61 207838 28.5 (fixed)
BLASR default 97.21 23.57 35910 23.8 (fixed)
Bowtie2*  
Seqalto*  
  1. ()are failed to align due to high error rate of reads (for Seqalto) and RAM constraint (up to 192 GB for Bowtie2)