Table 2 PacBio read set test results
From: Meta-aligner: long-read alignment based on genome statistics
Aligner | Commands or parameters | Mapping (%) | Unique reports (%) | Time(sec) | Peak memory (GB) |
|---|---|---|---|---|---|
Meta-aligner | Estimated parameters 1: | 88.99 | 84.01 | 24160 | 27 (flexible) |
\(\left (\ell _{1},d,\mathcal {S}_{1}\right)=\left (25,1,-\right)\) | |||||
Meta-aligner | Estimated parameters 2: | 97.97 | 93.37 | 39041 | 27 (flexible) |
\(\left (\ell _{1},d,\mathcal {S}_{1}\right)=\left (25,2,5\right)\) | |||||
BWA-SW | z=2 | 90.46 | 21 | 1573 | 22.6 (fixed) |
BWA-SW | z=10 | 95.55 | 19.61 | 207838 | 28.5 (fixed) |
BLASR | default | 97.21 | 23.57 | 35910 | 23.8 (fixed) |
Bowtie2* | − | ||||
Seqalto* | − | ||||