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Table 3 Meta-aligner results for very long and noisy reads

From: Meta-aligner: long-read alignment based on genome statistics

L ε % \(\left (\ell _{1}, d, \mathcal {S}_{1}\right)\) R (%) P (%) T (sec)
1000 10 indel (30,3,10) 96.33 98.10 5196
1000 10 indel (30,2,10) 95.91 98.27 3047
1000 15 indel (25,2,5) 95.02 95.66 7847
1000 10 indel (30,3,5) 96.64 96.92 10067
  5 mismatch     
4000 15 indel (25,2,−) 98.72 99.41 4899
4000 15 indel (25,2,12) 98.78 99.41 5103
4000 15 indel (25,2,−) 98.13 99.41 5435
  5 mismatch     
4000 15 indel (25,2,12) 98.23 99.43 5692
  5 mismatch     
8000 20 indel (25,2,−) 99.26 99.53 13283
8000 20 indel (25,2,12) 99.34 99.58 13668
8000 15 indel (25,2,−) 99.48 99.59 12887
  5 mismatch     
8000 15 indel (25,2,12) 99.52 99.61 13170
  5 mismatch     
  1. The overall Meta-aligner results for hg19 in the case of very high error rates (ε={10;15;20}%) and read lengths of L={1000;4000;8000} bps). Number of reads of length L is N=109/L