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Table 1 Overall GATK unfiltered alterations identified in HC and LC dataset (100 replicates of a dataset of 26 individuals and 11 genes)

From: GATK hard filtering: tunable parameters to improve variant calling for next generation sequencing targeted gene panel data

 

TV

FV

HC dataset

  Indels

17,359

64,281

  SNVs

89,743

1,372

LC dataset

  Indels

7,656

80,489

  SNVs

96,203

17,043

  1. TV true variants, FV false variants
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BMC Bioinformatics

ISSN: 1471-2105

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