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Table 1 Overall GATK unfiltered alterations identified in HC and LC dataset (100 replicates of a dataset of 26 individuals and 11 genes)

From: GATK hard filtering: tunable parameters to improve variant calling for next generation sequencing targeted gene panel data

HC dataset
Indels 17,359 64,281
SNVs 89,743 1,372
LC dataset
Indels 7,656 80,489
SNVs 96,203 17,043
  1. TV true variants, FV false variants