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Table 3 Coverage of the VPC by 95% confidence intervals (based on 500 simulations)

From: Model based heritability scores for high-throughput sequencing data

  Data from NB-sim Data from CP-sim
Method/ True VPC Low Medium High Low Medium High
CP-fit 91.8 (0.32) 93.2 (0.32) 94.2 (0.19) 93.4 (0.32) 92.4 (0.33) 92.8 (0.20)
NB-fit 90.2 (0.31) 91.8 (0.32) 92.0 (0.18) 93.4 (0.31) 90.4 (0.31) 78.4 (0.19)
VST 92.0 (0.32) 91.6 (0.33) 92.4 (0.20) 94.8 (0.32) 89.6 (0.34) 84.0 (0.22)
  1. Coverage percentage is shown at each level of true heritability score for data generated from NB-sim and CP-sim. Trues VPCs 0.2, 0.5 and 0.8 were considered as representatives for low, medium and high heritability. The values in parentheses show the average lengths of the intervals for the different cases. 200 bootstraps are used in each case