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Table 3 Coverage of the VPC by 95% confidence intervals (based on 500 simulations)

From: Model based heritability scores for high-throughput sequencing data

 

Data from NB-sim

Data from CP-sim

Method/ True VPC

Low

Medium

High

Low

Medium

High

CP-fit

91.8 (0.32)

93.2 (0.32)

94.2 (0.19)

93.4 (0.32)

92.4 (0.33)

92.8 (0.20)

NB-fit

90.2 (0.31)

91.8 (0.32)

92.0 (0.18)

93.4 (0.31)

90.4 (0.31)

78.4 (0.19)

VST

92.0 (0.32)

91.6 (0.33)

92.4 (0.20)

94.8 (0.32)

89.6 (0.34)

84.0 (0.22)

  1. Coverage percentage is shown at each level of true heritability score for data generated from NB-sim and CP-sim. Trues VPCs 0.2, 0.5 and 0.8 were considered as representatives for low, medium and high heritability. The values in parentheses show the average lengths of the intervals for the different cases. 200 bootstraps are used in each case