Skip to main content

Table 2 Transcriptome assembly and annotation descriptions of different species

From: Exploring the transcriptome of non-model oleaginous microalga Dunaliella tertiolecta through high-throughput sequencing and high performance computing

  C. reinhardtii v5.5 V. carteri v2.1 D. salina v1.0 D. tertiolecta Shin et al. Dt_v11/Dt_v11.2
Genome description 111.1 Mb arranged on 17 chromosomes and 37 minor scaffolds 131.2 Mb arranged in 434 scaffolds 343.7 Mb arranged in 5512 scaffolds - -
N50 (bp) 3938 4188 2291 1540 1797
Maximum contig length (bp) 72,700 24,197 17,353 15,234 16,518
Total size of contigs (bp) 63,797,006 51,775,597 33,246,103 16,600,538 24,538,468
Protein-coding transcripts 19,526 16,075 18,801 13,861 -
transcript_primaryTranscriptOnly 17,741 14,247 16,697 9839 17,845 / 15,336
Average length (bp) 3267 3220 1768 1197 1375
Alternatively spliced transcripts 1785 1828 2104 - -
  1. The entry in italic represents data from Dt_v11.2