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Table 1 Summary of 100 runs of SeqCNV on simulation data. Boundary (Start/End) is the average distance to the nearest starting (ending) point of the detected variants

From: SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data

Type One copy gain One copy loss
Resolution 1 MB 100 KB 10 KB 1 KB 1 MB 100 KB 10 KB 1 KB
Sensitivity 99.50% 99.00% 75.00% 67.80% 99.00% 96.50% 91.00% 66.80%
Boundary (Start) 1.69 KB 1.37 KB 0.73 KB 0.29 KB 0.71 KB 0.64 KB 0.49 KB 0.18 KB
Boundary (End) 1.28 KB 1.01 KB 0.91 KB 0.32 KB 0.91 KB 0.71 KB 0.72 KB 0.21 KB
False Positive Rate 0% 0% 0% 0% 0% 0% 0% 3.74%