Table 2 Most used SLiMs conserved and located in HIV-1 disordered regions
From: Prediction of virus-host protein-protein interactions mediated by short linear motifs
SLiM | #HIV-proteins | Pfam domain | Domain name |
|---|---|---|---|
LIG_WD40_WDR5_VDV_2 | 17 | IPR017986 | WD40-repeat-containing domain |
DOC_USP7_1 | 17 | PF00917 | MATH domain |
CLV_NRD_NRD_1 | 16 | PF00675 | Insulinase (Peptidase family M16) |
CLV_PCSK_KEX2_1 | 15 | PF00082 | Peptidase_S8 Subtilase family |
MOD_GSK3_1 | 15 | PF00069 | Protein kinase domain |
MOD_PIKK_1 | 15 | PF00454 | Phosphatidylinositol 3- and 4-kinase |
CLV_PCSK_SKI1_1 | 14 | PF00082 | Peptidase_S8 Subtilase family |
LIG_SH3_3 | 14 | PF00018 | SH3 domain |
MOD_NEK2_1 | 13 | PF00069 | Protein kinase domain |
LIG_FHA_2 | 13 | PF00498 | FHA domain |
MOD_CK1_1 | 13 | PF00069 | Protein kinase domain |
LIG_FHA_1 | 12 | PF00498 | FHA domain |
DOC_CYCLIN_1 | 12 | PF00134 | Dynein light chain type 1 |
LIG_LIR_Nem_3 | 12 | PF02991 | Autophagy protein Atg8 ubiquitin like |
DOC_WW_Pin1_4 | 12 | PF00397 | WW domain |
MOD_ProDKin_1 | 12 | PF00069 | Protein kinase domain |
MOD_PKA_2 | 12 | PF00069 | Protein kinase domain |
MOD_CK2_1 | 12 | PF00069 | Protein kinase domain |
TRG_ER_diArg_1 | 12 | PF00400 | WD domain, G-beta repeat |
LIG_SH2_STAT5 | 11 | PF00017 | SH2 domain |
LIG_LIR_Gen_1 | 11 | PF02991 | Autophagy protein Atg8 ubiquitin like |
CLV_PCSK_PC1ET2_1 | 11 | PF00082 | Peptidase_S8 Subtilase family |
MOD_GlcNHglycan | 11 | PF01048 | Phosphorylase superfamily |
MOD_N-GLC_1 | 10 | PF02516 | Oligosaccharyl transferase STT3 subunit |
TRG_ENDOCYTIC_2 | 10 | PF00928 | Adaptor complexes medium subunit family |