Table 8 Biological networks used to experimentally assess BicPAMS
From: Erratum to: BicPAMS: software for biological data analysis with pattern-based biclustering
Type | Source | Organism | ♯Nodes | ♯Interactions | Density | Notes on the weight of interactions |
|---|---|---|---|---|---|---|
GI (gene interactions) | DryGIN | Yeast | 4455 | 191309 | 1.0% | Weights (65% negative) from double-mutant arrays [36]. |
GI (gene interactions) | STRING | Yeast | 6314 | 3759902 | 1.1% | Known and predicted associations benchmarked from multiple data sources and literature (text mining), and combined through an integrative score [37]. |
PPI (protein interactions) | STRING | E. Coli | 8428 | 3293416 | 4.6% | |
PPI (protein interactions) | STRING | Human | 19247 | 8548002 | 2.3% |