Skip to main content

Table 8 Biological networks used to experimentally assess BicPAMS

From: Erratum to: BicPAMS: software for biological data analysis with pattern-based biclustering

Type Source Organism Nodes Interactions Density Notes on the weight of interactions
GI (gene interactions) DryGIN Yeast 4455 191309 1.0% Weights (65% negative) from double-mutant arrays [36].
GI (gene interactions) STRING Yeast 6314 3759902 1.1% Known and predicted associations benchmarked from multiple data sources and literature (text mining), and combined through an integrative score [37].
PPI (protein interactions) STRING E. Coli 8428 3293416 4.6%
PPI (protein interactions) STRING Human 19247 8548002 2.3%