Skip to main content

Table 1 The bioinformatic tools adopted for the prediction of secretory proteins from Puccinia helianthi transcriptome

From: The prediction of a pathogenesis-related secretome of Puccinia helianthi through high-throughput transcriptome analysis

Prediction algorithms Objects predicted References
SignalP v4.1 N-terminal signal peptides http://www.cbs.dtu.dk/services/SignalP/
TMHMM v2.0 Transmembrane domains http://www.cbs.dtu.dk/services/TMHMM/
Big-PI predictor GPI-anchor site http://mendel.imp.ac.at/gpi/fungi_server.html
TargetP v1.1 Secretion pathway and position http://www.cbs.dtu.dk/services/TargetP/
ProtComp v9.0 Localization sequences http://linux1.softberry.com/
LipoP v1.0 Lipoprotein signal peptides http://www.cbs.dtu.dk/services/LipoP/
TatP v1.0 Signal peptide with RR-motif http://www.cbs.dtu.dk/services/TatP/
Clustal Omega Proteins homology prediction http://www.ebi.ac.uk/Tools/msa/clustalo/