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Table 1 The bioinformatic tools adopted for the prediction of secretory proteins from Puccinia helianthi transcriptome

From: The prediction of a pathogenesis-related secretome of Puccinia helianthi through high-throughput transcriptome analysis

Prediction algorithms Objects predicted References
SignalP v4.1 N-terminal signal peptides
TMHMM v2.0 Transmembrane domains
Big-PI predictor GPI-anchor site
TargetP v1.1 Secretion pathway and position
ProtComp v9.0 Localization sequences
LipoP v1.0 Lipoprotein signal peptides
TatP v1.0 Signal peptide with RR-motif
Clustal Omega Proteins homology prediction