From: LW-FQZip 2: a parallelized reference-based compression of FASTQ files
 |  | LW-FQZip 2 | LW-FQZip 2 (−g) | LW-FQZip 1 | Quip (−a) | Quip (−r) | DSRC 2 | CRAM | FQZcomp | LFQC | LEON | SCALCE | bzip 2 | gzip |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Long-read | SRR2916693 | 16.7% | 15.3% | 18.1% | 20.9% | 20.5% | 20.2% | 21.9% | 21.6% | 12.7% | 19.5% | 17.2%a | 24.2% | 29.6% |
SRR2994368 | 17.3% | 16.0% | 17.9% | 20.1% | N/A | 23.2% | 26.4% | N/A | N/A | 23.1% | 17.3%a | 28.5% | 34.2% | |
SRR3211986 | 33.3% | 32.3% | N/A | 33.3% | N/A | N/A | 33.9% | N/A | 32.3% | N/A | 33.4%a | 36.4% | 42.6% | |
ERR739513 | 35.2% | 34.8% | N/A | N/A | N/A | N/A | 35.6% | N/A | 34.9% | N/A | N/A | 39.7% | 45.4% | |
SRR3190692 | 12.7% | 11.7% | 13.2% | 16.5% | N/A | 20.3% | 22.3% | N/A | N/A | 18.1% | 12.7%a | 24.4% | 29.5% | |
Short-read | ERR385912 | 6.4% | 5.0% | 6.6% | 7.2% | N/A | 7.8% | N/A | N/A | 5.8% | 7.0% | 6.6%a | 13.9% | 17.9% |
ERR386131 | 16.5% | 16.0% | 18.7% | 17.7% | 16.6% | 16.8% | 25.5% | 24.6% | 15.5% | N/A | 16.6%a | 21.5% | 26.0% | |
SRR034509 | 23.7% | 22.7% | 25.0% | 25.1% | 24.9% | 26.1% | 27.4% | 26.1% | 23.7% | 27.9% | 24.5%a | 31.5% | 36.9% | |
ERR174310 | 21.0% | 20.1% | N/A | 20.0% | N/A | 20.2% | N/A | N/A | N/A | 25.3% | 19.6%a | 26.2% | 31.7% | |
ERR194147 | 20.1% | 14.3% | N/A | 20.0% | N/A | 20.3% | N/A | N/A | N/A | 20.3% | 15.4%a | 19.7% | 23.6% |