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Table 3 The memory usage (MB) of the compared methods on ten test data sets

From: LW-FQZip 2: a parallelized reference-based compression of FASTQ files

  LW-
FQZip 2
LW-
FQZip 2 (−g)
LW-
FQZip 1
Quip
(−a)
Quip
(−r)
DSRC 2 CRAM FQZcomp LFQC SCALCE LEON bzip 2 gzip
SRR2916693 compression 1605 4420 459 759 391 582 784 312 3965 1380 1722 7.6 1.6
decompression 1598 4127 37 756 389 601 620 314 3932 1050 696 4.8 1.5
SRR2994368 compression 1582 14158 1048 2801 389 6175 1355 N/A N/A 4073 5435 7.6 1.6
decompression 1579 13154 69 2198 387 7234 652 N/A N/A 1050 2623 4.8 1.5
SRR3211986 compression 1190 12935 N/A 1098 N/A N/A 5777 N/A 4768 2158 N/A 7.6 1.6
decompression 1528 5657 N/A 1109 N/A N/A 2381 N/A 4320 1035 N/A 4.8 1.5
ERR739513 compression 1283 11511 N/A N/A N/A N/A 3694 N/A 5108 N/A N/A 7.6 1.6
decompression 1403 11079 N/A N/A N/A N/A 1455 N/A 4748 N/A N/A 4.8 1.5
SRR3190692 compression 1726 14560 1058 3552 391 14157 1363 N/A N/A 5219 6776 7.6 1.6
decompression 1725 13329 69 2898 386 14794 661 N/A N/A 1055 3217 4.8 1.5
ERR385912 compression 1603 2793 410 772 389 911 N/A N/A 3140 1422 1717 7.6 1.6
decompression 1603 2655 69 770 392 908 N/A N/A 3060 1040 504 4.8 1.5
ERR386131 compression 1691 12443 1033 771 389 1844 1318 322 5175 1961 N/A 7.6 1.6
decompression 1721 12165 39 768 384 1950 651 319 4835 1049 N/A 4.8 1.5
SRR034509 compression 1748 14670 1073 1531 383 6683 1351 324 5352 4151 4139 7.6 1.6
decompression 1752 7042 71 1218 391 7736 653 309 4859 1050 1799 4.8 1.5
ERR174310 compression 1886 16270 N/A 5333 N/A 5558 N/A N/A N/A 5333 7797 7.6 1.6
decompression 1865 11239 N/A 1156 N/A 18487 N/A N/A N/A 1045 5106 4.8 1.5
ERR194147 compression 1953 17771 N/A 782 N/A 20271 N/A N/A N/A 5380 7192 7.6 1.6
decompression 1963 13908 N/A 780 N/A 24284 N/A N/A N/A 1057 5322 4.8 1.5
  1. Note: The best results are highlighted in bold