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Table 3 The memory usage (MB) of the compared methods on ten test data sets

From: LW-FQZip 2: a parallelized reference-based compression of FASTQ files

 

LW-

FQZip 2

LW-

FQZip 2 (−g)

LW-

FQZip 1

Quip

(−a)

Quip

(−r)

DSRC 2

CRAM

FQZcomp

LFQC

SCALCE

LEON

bzip 2

gzip

SRR2916693

compression

1605

4420

459

759

391

582

784

312

3965

1380

1722

7.6

1.6

decompression

1598

4127

37

756

389

601

620

314

3932

1050

696

4.8

1.5

SRR2994368

compression

1582

14158

1048

2801

389

6175

1355

N/A

N/A

4073

5435

7.6

1.6

decompression

1579

13154

69

2198

387

7234

652

N/A

N/A

1050

2623

4.8

1.5

SRR3211986

compression

1190

12935

N/A

1098

N/A

N/A

5777

N/A

4768

2158

N/A

7.6

1.6

decompression

1528

5657

N/A

1109

N/A

N/A

2381

N/A

4320

1035

N/A

4.8

1.5

ERR739513

compression

1283

11511

N/A

N/A

N/A

N/A

3694

N/A

5108

N/A

N/A

7.6

1.6

decompression

1403

11079

N/A

N/A

N/A

N/A

1455

N/A

4748

N/A

N/A

4.8

1.5

SRR3190692

compression

1726

14560

1058

3552

391

14157

1363

N/A

N/A

5219

6776

7.6

1.6

decompression

1725

13329

69

2898

386

14794

661

N/A

N/A

1055

3217

4.8

1.5

ERR385912

compression

1603

2793

410

772

389

911

N/A

N/A

3140

1422

1717

7.6

1.6

decompression

1603

2655

69

770

392

908

N/A

N/A

3060

1040

504

4.8

1.5

ERR386131

compression

1691

12443

1033

771

389

1844

1318

322

5175

1961

N/A

7.6

1.6

decompression

1721

12165

39

768

384

1950

651

319

4835

1049

N/A

4.8

1.5

SRR034509

compression

1748

14670

1073

1531

383

6683

1351

324

5352

4151

4139

7.6

1.6

decompression

1752

7042

71

1218

391

7736

653

309

4859

1050

1799

4.8

1.5

ERR174310

compression

1886

16270

N/A

5333

N/A

5558

N/A

N/A

N/A

5333

7797

7.6

1.6

decompression

1865

11239

N/A

1156

N/A

18487

N/A

N/A

N/A

1045

5106

4.8

1.5

ERR194147

compression

1953

17771

N/A

782

N/A

20271

N/A

N/A

N/A

5380

7192

7.6

1.6

decompression

1963

13908

N/A

780

N/A

24284

N/A

N/A

N/A

1057

5322

4.8

1.5

  1. Note: The best results are highlighted in bold