From: LW-FQZip 2: a parallelized reference-based compression of FASTQ files
 | LW- FQZip 2 | LW- FQZip 2 (−g) | LW- FQZip 1 | Quip (−a) | Quip (−r) | DSRC 2 | CRAM | FQZcomp | LFQC | SCALCE | LEON | bzip 2 | gzip | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SRR2916693 | compression | 1605 | 4420 | 459 | 759 | 391 | 582 | 784 | 312 | 3965 | 1380 | 1722 | 7.6 | 1.6 |
decompression | 1598 | 4127 | 37 | 756 | 389 | 601 | 620 | 314 | 3932 | 1050 | 696 | 4.8 | 1.5 | |
SRR2994368 | compression | 1582 | 14158 | 1048 | 2801 | 389 | 6175 | 1355 | N/A | N/A | 4073 | 5435 | 7.6 | 1.6 |
decompression | 1579 | 13154 | 69 | 2198 | 387 | 7234 | 652 | N/A | N/A | 1050 | 2623 | 4.8 | 1.5 | |
SRR3211986 | compression | 1190 | 12935 | N/A | 1098 | N/A | N/A | 5777 | N/A | 4768 | 2158 | N/A | 7.6 | 1.6 |
decompression | 1528 | 5657 | N/A | 1109 | N/A | N/A | 2381 | N/A | 4320 | 1035 | N/A | 4.8 | 1.5 | |
ERR739513 | compression | 1283 | 11511 | N/A | N/A | N/A | N/A | 3694 | N/A | 5108 | N/A | N/A | 7.6 | 1.6 |
decompression | 1403 | 11079 | N/A | N/A | N/A | N/A | 1455 | N/A | 4748 | N/A | N/A | 4.8 | 1.5 | |
SRR3190692 | compression | 1726 | 14560 | 1058 | 3552 | 391 | 14157 | 1363 | N/A | N/A | 5219 | 6776 | 7.6 | 1.6 |
decompression | 1725 | 13329 | 69 | 2898 | 386 | 14794 | 661 | N/A | N/A | 1055 | 3217 | 4.8 | 1.5 | |
ERR385912 | compression | 1603 | 2793 | 410 | 772 | 389 | 911 | N/A | N/A | 3140 | 1422 | 1717 | 7.6 | 1.6 |
decompression | 1603 | 2655 | 69 | 770 | 392 | 908 | N/A | N/A | 3060 | 1040 | 504 | 4.8 | 1.5 | |
ERR386131 | compression | 1691 | 12443 | 1033 | 771 | 389 | 1844 | 1318 | 322 | 5175 | 1961 | N/A | 7.6 | 1.6 |
decompression | 1721 | 12165 | 39 | 768 | 384 | 1950 | 651 | 319 | 4835 | 1049 | N/A | 4.8 | 1.5 | |
SRR034509 | compression | 1748 | 14670 | 1073 | 1531 | 383 | 6683 | 1351 | 324 | 5352 | 4151 | 4139 | 7.6 | 1.6 |
decompression | 1752 | 7042 | 71 | 1218 | 391 | 7736 | 653 | 309 | 4859 | 1050 | 1799 | 4.8 | 1.5 | |
ERR174310 | compression | 1886 | 16270 | N/A | 5333 | N/A | 5558 | N/A | N/A | N/A | 5333 | 7797 | 7.6 | 1.6 |
decompression | 1865 | 11239 | N/A | 1156 | N/A | 18487 | N/A | N/A | N/A | 1045 | 5106 | 4.8 | 1.5 | |
ERR194147 | compression | 1953 | 17771 | N/A | 782 | N/A | 20271 | N/A | N/A | N/A | 5380 | 7192 | 7.6 | 1.6 |
decompression | 1963 | 13908 | N/A | 780 | N/A | 24284 | N/A | N/A | N/A | 1057 | 5322 | 4.8 | 1.5 |