TY - STD TI - Solovieff N, Hartley SW, Baldwin CT, Perls TT, Steinberg MH, Sebastiani P. Clustering by genetic ancestry using genome-wide snp data. BMC Genet. 2010; 11. doi:10.1186/1471-2156-11-108. UR - http://dx.doi.org/10.1186/1471-2156-11-108 ID - ref1 ER - TY - JOUR AU - Patterson, N. AU - Price, A. L. AU - Reich, D. PY - 2006 DA - 2006// TI - Population structure and eigenanalysis JO - PLoS Genet VL - 2 UR - https://doi.org/10.1371/journal.pgen.0020190 DO - 10.1371/journal.pgen.0020190 ID - Patterson2006 ER - TY - JOUR AU - Ma, S. AU - Dai, Y. PY - 2010 DA - 2010// TI - Principal component analysis based methods in bioinformatics studies JO - Brief Bioinforma VL - 12 UR - https://doi.org/10.1093/bib/bbq090 DO - 10.1093/bib/bbq090 ID - Ma2010 ER - TY - STD TI - Caussinus H, Ruiz A. Interesting Projections of Multidimensional Data by Means of Generalized Principal Component Analyses In: Momirović K, Mildner V, editors. Compstat: Proceedings in Computational Statistics, 9th Symposium held at Dubrovnik, Yugoslavia, 1990. Heidelberg: Physica-Verlag HD: 1990. p. 121–6. doi:10.1007/978-3-642-50096-1_19. UR - http://dx.doi.org/10.1007/978-3-642-50096-1_19 ID - ref4 ER - TY - JOUR AU - Tyler, D. E. AU - Critchley, F. AU - Dümbgen, L. AU - Oja, H. PY - 2009 DA - 2009// TI - Invariant co-ordinate selection JO - J R Stat Soc Series B VL - 71 UR - https://doi.org/10.1111/j.1467-9868.2009.00706.x DO - 10.1111/j.1467-9868.2009.00706.x ID - Tyler2009 ER - TY - BOOK AU - Vidal, R. AU - Ma, Y. AU - Sastry, S. S. PY - 2016 DA - 2016// TI - Generalized Principal Component Analysis PB - Springer CY - New York UR - https://doi.org/10.1007/978-0-387-87811-9 DO - 10.1007/978-0-387-87811-9 ID - Vidal2016 ER - TY - JOUR AU - Musial, J. P. AU - Hüsler, F. AU - Sütterlin, M. AU - Neuhaus, C. AU - Wunderle, S. PY - 2014 DA - 2014// TI - Daytime low stratiform cloud detection on avhrr imagery JO - Remote Sensing VL - 6 UR - https://doi.org/10.3390/rs6065124 DO - 10.3390/rs6065124 ID - Musial2014 ER - TY - JOUR AU - Musial, J. P. AU - Hüsler, F. AU - Sütterlin, M. AU - Neuhaus, C. AU - Wunderle, S. PY - 2014 DA - 2014// TI - Probabilistic approach to cloud and snow detection on advanced very high resolution radiometer (avhrr) imagery JO - Atmos Meas Tech VL - 7 UR - https://doi.org/10.5194/amt-7-799-2014 DO - 10.5194/amt-7-799-2014 ID - Musial2014 ER - TY - JOUR AU - Bookstein, F. L. AU - Mitteroecker, P. PY - 2013 DA - 2013// TI - Comparing covariance matrices by relative eigenanalysis, with applications to organismal biology JO - Evol Biol VL - 41 UR - https://doi.org/10.1007/s11692-013-9260-5 DO - 10.1007/s11692-013-9260-5 ID - Bookstein2013 ER - TY - JOUR AU - van der Maaten, L. J. P. AU - Hinton, G. E. PY - 2008 DA - 2008// TI - Visualizing high-dimensional data using t-sne JO - J Mach Learn Res VL - 9 ID - van der Maaten2008 ER - TY - JOUR AU - Tenenbaum, J. B. AU - de Silva, V. AU - Langford, J. C. PY - 2000 DA - 2000// TI - A global geometric framework for nonlinear dimensionality reduction JO - Science VL - 290 UR - https://doi.org/10.1126/science.290.5500.2319 DO - 10.1126/science.290.5500.2319 ID - Tenenbaum2000 ER - TY - JOUR AU - Roweis, S. AU - Saul, L. PY - 2000 DA - 2000// TI - Nonlinear dimensionality reduction by locally linear embedding JO - Science VL - 290 UR - https://doi.org/10.1126/science.290.5500.2323 DO - 10.1126/science.290.5500.2323 ID - Roweis2000 ER - TY - JOUR AU - Schölkopf, B. AU - Smola, A. AU - Müller, K. R. PY - 1998 DA - 1998// TI - Nonlinear component analysis as a kernel eigenvalue problem JO - Neural Comput VL - 10 UR - https://doi.org/10.1162/089976698300017467 DO - 10.1162/089976698300017467 ID - Schölkopf1998 ER - TY - JOUR AU - Coifman, R. R. AU - Lafon, S. AU - Lee, A. B. AU - Maggioni, M. AU - Nadler, B. AU - Warner, F. AU - Zucker, S. W. PY - 2005 DA - 2005// TI - Geometric diffusions as a tool for harmonic analysis and structure definition of data: Diffusion maps JO - PNAS VL - 102 UR - https://doi.org/10.1073/pnas.0500334102 DO - 10.1073/pnas.0500334102 ID - Coifman2005 ER - TY - JOUR AU - Tuiskula-Haavisto, M. AU - Honkatukia, M. AU - Preisinger, R. AU - Schmutz, M. AU - de Koning, D. J. AU - Wei, W. H. AU - Vilkki, J. PY - 2011 DA - 2011// TI - Quantitative trait loci affecting eggshell traits in an f2 population JO - Animal Genet VL - 42 UR - https://doi.org/10.1111/j.1365-2052.2010.02131.x DO - 10.1111/j.1365-2052.2010.02131.x ID - Tuiskula-Haavisto2011 ER - TY - JOUR AU - Honkatukia, M. AU - Tuiskula-Haavisto, M. AU - Arango, J. AU - Tabell, J. AU - Schmutz, M. AU - Preisinger, R. AU - Vilkki, J. PY - 2013 DA - 2013// TI - Qtl mapping of egg albumen quality in egg layers JO - Genet Sel Evol VL - 45 UR - https://doi.org/10.1186/1297-9686-45-31 DO - 10.1186/1297-9686-45-31 ID - Honkatukia2013 ER - TY - STD TI - Nordhausen K, Tyler DE. A cautionary note on robust covariance plug-in methods. Biometrika. 2015. doi:10.1093/biomet/asv022. UR - http://dx.doi.org/10.1093/biomet/asv022 ID - ref17 ER - TY - STD TI - Nordhausen K, Oja H, Ollila E. Multivariate Models and the First Four Moments. Singapore: World Scientific; 2011, pp. 267–87. doi:10.1142/9789814340564_0016. UR - http://dx.doi.org/10.1142/9789814340564_0016 ID - ref18 ER - TY - JOUR AU - Nordhausen, K. AU - Oja, H. AU - Tyler, D. E. PY - 2008 DA - 2008// TI - Tools for exploring multivariate data: The package ICS JO - J Stat Softw VL - 28 UR - https://doi.org/10.18637/jss.v028.i06 DO - 10.18637/jss.v028.i06 ID - Nordhausen2008 ER - TY - JOUR AU - Miettinen, J. AU - Taskinen, S. AU - Nordhausen, K. AU - Oja, H. PY - 2015 DA - 2015// TI - Fourth moments and independent component analysis JO - Statist Sci VL - 30 UR - https://doi.org/10.1214/15-STS520 DO - 10.1214/15-STS520 ID - Miettinen2015 ER - TY - JOUR AU - Tapio, M. AU - Tapio, I. AU - Grislis, Z. AU - Holm, L. E. AU - Jeppsson, S. AU - Kantanen, J. AU - Miceikiene, I. AU - Olsaker, I. AU - Viinalass, H. AU - Eythorsdottir, E. PY - 2005 DA - 2005// TI - Native breeds demonstrate high contributions to the molecular variation in northern european sheep JO - Mol Ecol VL - 14 UR - https://doi.org/10.1111/j.1365-294X.2005.02727.x DO - 10.1111/j.1365-294X.2005.02727.x ID - Tapio2005 ER - TY - JOUR AU - Tyler, D. E. PY - 2010 DA - 2010// TI - A note on multivariate location and scatter statistics for sparse data sets JO - Stat Probab Lett VL - 80 UR - https://doi.org/10.1016/j.spl.2010.05.006 DO - 10.1016/j.spl.2010.05.006 ID - Tyler2010 ER - TY - CHAP AU - Oja, H. AU - Nordhausen, K. ED - El-Shaarawi, A. -. H. ED - Piegorsch, W. PY - 2012 DA - 2012// TI - Independent Component Analysis BT - Encyclopedia of Environmetrics PB - Sons CY - New Jersey ID - Oja2012 ER - TY - JOUR AU - Rand, W. M. PY - 1971 DA - 1971// TI - Objective criteria for the evaluation of clustering methods JO - J Am Stat Assoc VL - 66 UR - https://doi.org/10.1080/01621459.1971.10482356 DO - 10.1080/01621459.1971.10482356 ID - Rand1971 ER - TY - JOUR AU - Fischer, D. AU - Oja, H. AU - Schleutker, J. AU - Sen, P. K. AU - Wahlfors, T. PY - 2014 DA - 2014// TI - Generalized Mann-Whitney type tests for microarray experiments JO - Scand J Stat VL - 41 UR - https://doi.org/10.1111/sjos.12055 DO - 10.1111/sjos.12055 ID - Fischer2014 ER - TY - STD TI - Fischer D, Oja H. Mann-Whitney type tests for microarray experiments: The R package gMWT. J Stat Softw. 2015; 65(1):1–19. doi:10.18637/jss.v065.i09. UR - http://dx.doi.org/10.18637/jss.v065.i09 ID - ref26 ER - TY - STD TI - Donaldson J. Tsne: T-Distributed Stochastic Neighbor Embedding for R (t-SNE). 2016. R package version 0.1-3. http://CRAN.R-project.org/package=tsne. Accessed 30 Nov 2016. UR - http://CRAN.R-project.org/package=tsne ID - ref27 ER - TY - STD TI - Bartenhagen C. RDRToolbox: A Package for Nonlinear Dimension Reduction with Isomap and LLE. 2014. R package version 1.20.0. https://www.bioconductor.org/packages/release/bioc/html/RDRToolbox.html. Accessed 30 Nov 2016. UR - https://www.bioconductor.org/packages/release/bioc/html/RDRToolbox.html ID - ref28 ER - TY - STD TI - Diedrich H, Abel M. Lle: Locally Linear Embedding. 2012. R package version 1.1. http://CRAN.R-project.org/package=lle. Accessed 30 Nov 2016. UR - http://CRAN.R-project.org/package=lle ID - ref29 ER - TY - JOUR AU - Karatzoglou, A. AU - Smola, A. AU - Hornik, K. AU - Zeileis, A. PY - 2004 DA - 2004// TI - kernlab – an S4 package for kernel methods in R JO - J Stat Softw VL - 11 UR - https://doi.org/10.18637/jss.v011.i09 DO - 10.18637/jss.v011.i09 ID - Karatzoglou2004 ER - TY - STD TI - Angerer P, Haghverdi L, Büttner M, Theis FJ, Marr C, Buettner F. destiny – diffusion maps for large-scale single-cell data in R. Bioinformatics. 2015. doi:10.1093/bioinformatics/btv715.http://bioinformatics.oxfordjournals.org/content/early/2015/12/13/bioinformatics.btv715.full.pdf+html. UR - http://bioinformatics.oxfordjournals.org/content/early/2015/12/13/bioinformatics.btv715.full.pdf+html ID - ref31 ER - TY - JOUR AU - Zheng, X. AU - Levine, D. AU - Shen, J. AU - Gogarten, S. AU - Laurie, C. AU - Weir, B. PY - 2012 DA - 2012// TI - A high-performance computing toolset for relatedness and principal component analysis of snp data JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts606 DO - 10.1093/bioinformatics/bts606 ID - Zheng2012 ER -