Table 1 Distribution of different class of transcripts among Human, Mouse, and Zebrafish in Ensembl and Vega annotation databases
From: Identification of long non-coding transcripts with feature selection: a comparative study
Ensemble | Vega with KNOWN status | |||||
|---|---|---|---|---|---|---|
Class | Human | Mouse | Zebrafish | Human | Mouse | Zebrafish |
PCT | 79851 | 50607 | 41695 | 71030 | 41569 | 11051 |
LincRNA | 13473 | 5362 | 1039 | 13365 | 4711 | 1004 |
Intronic | 977 | 277 | 58 | 973 | 277 | 57 |
Overlapping | 343 | 47 | 9 | 342 | 45 | 9 |
Antisense | 11186 | 3208 | 711 | 11141 | 3122 | 699 |
Pseudogene | 14537 | 9442 | 261 | 14491 | 9066 | 199 |
Other ncRNA | 78167 | 43609 | 11664 | 68265 | 37421 | 5703 |
IG/TR genes | 434 | 642 | 413 | 496 | ||
Total | 198968 | 113194 | 55437 | 180020 | 96707 | 18722 |