Table 3 Signatures detected in top 20 ranked features (Human)
From: Identification of long non-coding transcripts with feature selection: a comparative study
Signatue # | Algorithm groups | BASIC | CONS | NUCLEO | ORF | REPS | AUPR (AUC) |
|---|---|---|---|---|---|---|---|
1 | IG, RFS, | TxExLenAvg, | ph100m, | AA, AAT, AT, | KOZAK, | DNA.TcMar.Tigger, | 0.69 (0.94) |
RF, | TxLen, | ph20m, | ATA, CA, CC, | OrfProp | LINE.L1, | ||
EFmn | TxNex | ph20mn, | CCG, CG, | LTR.ERV1, | |||
ph20mx, | CGA, CGT, | LTR.ERVL, | |||||
py100m, | FickScore, GC, | LTR.ERVL.MaLR, | |||||
py100mx, | GG, GT, GTG, | SINE.Alu, | |||||
py20m | TA, TAT, TCG, | SINE.MIR | |||||
TT, TTA | |||||||
2 | GR | TxExLenAvg | ph100m, | ATC, ATG, CA, | DNA.DNA, | 0.55 (0.92) | |
ph20m, | CAC | DNA.hAT.Blackjack, | |||||
ph20mx, | DNA.MULE.MuDR, | ||||||
py100m, | DNA.PiggyBac, | ||||||
py100mx, | DNA.TcMar.Tc2, | ||||||
py20m | LINE.Penelope, | ||||||
LTR.LTR, | |||||||
RC.Helitron, | |||||||
SINE.MIR | |||||||
3 | GFS | TxExLenAvg, | ph100m, | AA, ACC, CA, | KOZAK | LINE.Penelope | 0.67 (0.94) |
TxLen, | ph20mx, | CAG, CTA, | |||||
TxNex | py100m, | FickScore, | |||||
py20m | GAT, GT, | ||||||
TAC, TAT, | |||||||
TGG | |||||||
4 | LR, EN | TxLen, | ph100m, | AA, AAT, ACA, | KOZAK | 0.66 (0.94) | |
TxNex | ph20m, | ACT, CA, | |||||
ph20mx, | CAA, CAC, | ||||||
py100m, | CG, CGA, | ||||||
py100mx | FickScore, GG, | ||||||
GT, GTG, | |||||||
TAC, TCT, | |||||||
TGA, TGG | |||||||
5 | 5 WT | TxExLenAvg, | AAC, AAG, | 0.66 (0.94) | |||
TxNex | AC, ACA, | ||||||
ACC, ACG, | |||||||
ACT, AGA, | |||||||
AGC, AGT, | |||||||
ATA, CA, CT, | |||||||
GA, GT, TA, | |||||||
TC, TG |