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Table 1 List of the experimental validated mRNA targets for the RyhB and FnrS sRNAs versus the results given by rNAV

From: rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining

  

sRNATarBase

BSRD

Wright et al.

ECOCYC

rNAV

  

3.0 [26]

[42]

[28, 29]

[27]

 

RyhB targets

iscS

x

x

x

x

x

 

fur

 

x

x

  
 

sdhD

x

x

  

x

 

sodB a

x

x

x

x

x

 

acnA

x

x

  

x

 

fumA

x

x

x

x

x

 

nirB

x

 

x

x

x

 

marA

x

 

x

x

 
 

bfr

 

x

  

x

 

nagZ

x

 

x

 

x

 

ftnA

x

x

   
 

sdhA

x

 

x

 

x

 

erpA

x

 

x

x

x

 

sdhC

x

 

x

x

x

 

sdhCDAB

  

x

 

x

 

cysE

x

 

x

x

x

 

msrB=yeaA

  

x

 

x

 

hemB

   

x

 
 

hemH

   

x

 
 

uof

   

x

 
 

sodA

   

x

x

 

shiA

x

x

 

x

 

FnrS targets

folX

x

x

x

x

x

 

gpmA

x

x

x

x

x

 

folE

x

x

x

x

x

 

maeA

x

x

x

x

x

 

iscR

x

 

x

x

x

 

marA

x

 

x

x

x

 

nagZ

x

 

x

 

x

 

sdhA

x

 

x

x

x

 

sodA

x

x

x

x

x

 

sodB a

x

x

x

x

x

 

metE

x

x

x

x

x

 

cydD

x

x

x

x

x

 

yobA

x

x

x

x

x

  1. aindicates the shared targets by the two sRNAs