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Table 5 The 10 most significant results of the analysis on the RA dataset from WTCCC

From: KNN-MDR: a learning approach for improving interactions mapping performances in genome wide association studies

SNP

Position

Testing balanced accuracy

P-value

rs10979420, rs778980

9:108634242, 19:5863725

0.89

2.51*10-6

rs10979420, rs778982

9:108634242, 19:5866574

0.89

2.51*10-6

rs6781338, rs778982

3:180060018, 19:5866574

0.89

2.51*10-6

rs778980, rs17325560

19:5863725, 20:2614933

0.89

2.51*10-6

rs4979291, rs10979420

9:107732763, 9:108634242

0.89

2.51*10-6

rs561259, rs10979420

2:79014325, 9:108634242

0.89

2.51*10-6

rs1862333, rs17325560

5:181066946, 20:2614933

0.89

2.51*10-6

rs1862333, rs485409

5:181066946,18:28918712

0.89

2.51*10-6

rs571307, rs578044

13:29942173,18:28918696

0.89

2.51*10-6

rs1169565, rs571307

2:71196518, 13:29942173

0.88

2.51*10-6

  1. The first two columns provide the names and chromosomal positions of the SNP found to be associated to the phenotype. Positions are indicated by the chromosome and the SNP physical position on the chromosome using the NCBI human build 35. The third column contains the corresponding balanced accuracies and the last column reports the P-values computed using an adaptative permutation scheme. The complete table is provided as Additional file 7
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BMC Bioinformatics

ISSN: 1471-2105

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