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Table 3 Proteins with up-regulated expression profiles (PUR proteins)

From: The autophagy interaction network of the aging model Podospora anserina

Protein Alias Module no. Pearson correlation Ratio
Pa_0_1500 PaATG13 2 0.87 1.74
Pa_1_10350 PaMAN1 2 0.87 2.10
Pa_5_4470 PaTRS130 6 0.87 3.94
Pa_7_7880 PaIRS4 1 0.86 2.79
Pa_1_11020 PaATG6 7 0.84 3.48
Pa_1_5330 PaRPD3a 2 0.81 1.65
Pa_4_2219 Pa_4_2219 TH 0.79 4.96
Pa_2_12420 PaNBR1 3 0.78 3.13
Pa_6_1830 PaVPS15 7 0.77 2.40
Pa_2_2450 Pa_2_2450 TH 0.72 3.38
  1. For ten proteins, the corresponding transcripts were up-regulated during aging (see expression profiles in Fig. 3 of the nodes marked by red arrows). The higher the Pearson correlation coefficient the straighter increases the related expression profile or the number of gene products, respectively. TH indicates that the protein was not assigned to any module, since it was only found in the yeast two-hybrid analysis. The last column gives the ratio of the transcript abundance from the first to the last day of measurement. The protein identifiers were adopted from the P. anserina genome database