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Table 4 Percent ancestry of each type, as called by AD-LIBS and HAPMIX, in the four bears sequenced to sufficient coverage depth for variant calling

From: AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data

Bear Ancestry state AD-LIBS HAPMIX Agreement
ABC01 Hom. Polar 4.30% 7.30% 43.6%
ABC01 Heterozygous 28.7% 14.2% 46.7%
ABC01 Hom. Brown 67.1% 78.5% 84.2%
ABC01 Total 100% 100% 72.7%
ABC05 Hom. Polar 4.90% 8.39% 47.5%
ABC05 Heterozygous 28.3% 12.8% 44.2%
ABC05 Hom. Brown 66.8% 78.8% 84.0%
ABC05 Total 100% 100% 72.3%
Adm2 Hom. Polar 3.60% 6.52% 43.6%
Adm2 Heterozygous 26.8% 12.2% 42.6%
Adm2 Hom. Brown 69.6% 81.3% 84.7%
Adm2 Total 100% 100% 73.2%
Bar Hom. Polar 4.56% 7.68% 46.6%
Bar Heterozygous 27.8% 13.2% 44.6%
Bar Hom. brown 67.6% 79.1% 84.3%
Bar Total 100% 100% 72.8%
  1. AD-LIBS calls more heterozygous ancestry than HAPMIX and probably overestimates heterozygous ancestry genome-wide