Table 4 Percent ancestry of each type, as called by AD-LIBS and HAPMIX, in the four bears sequenced to sufficient coverage depth for variant calling
From: AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data
Bear | Ancestry state | AD-LIBS | HAPMIX | Agreement |
|---|---|---|---|---|
ABC01 | Hom. Polar | 4.30% | 7.30% | 43.6% |
ABC01 | Heterozygous | 28.7% | 14.2% | 46.7% |
ABC01 | Hom. Brown | 67.1% | 78.5% | 84.2% |
ABC01 | Total | 100% | 100% | 72.7% |
ABC05 | Hom. Polar | 4.90% | 8.39% | 47.5% |
ABC05 | Heterozygous | 28.3% | 12.8% | 44.2% |
ABC05 | Hom. Brown | 66.8% | 78.8% | 84.0% |
ABC05 | Total | 100% | 100% | 72.3% |
Adm2 | Hom. Polar | 3.60% | 6.52% | 43.6% |
Adm2 | Heterozygous | 26.8% | 12.2% | 42.6% |
Adm2 | Hom. Brown | 69.6% | 81.3% | 84.7% |
Adm2 | Total | 100% | 100% | 73.2% |
Bar | Hom. Polar | 4.56% | 7.68% | 46.6% |
Bar | Heterozygous | 27.8% | 13.2% | 44.6% |
Bar | Hom. brown | 67.6% | 79.1% | 84.3% |
Bar | Total | 100% | 100% | 72.8% |