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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Genetic sequence-based prediction of long-range chromatin interactions suggests a potential role of short tandem repeat sequences in genome organization

Fig. 5

‘AMPD’ visualization of the informative 3-mer pairs from the classifiers for locus chr22:32170492-32188129 which is, both, region 7 in K562 and region 6 in HeLa-S3 (Refer Table 1 for region details). Top panel: At distances in (0-100) basepairs, the 3-mer pair that maximally contributes towards positive and negative classification of a given locus is shown. Weights are shown on the horizontal axis, distances on the vertical axis. Bottom panel: 3-mer ‘AMPD’ visualization of the same locus in HeLa-S3

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BMC Bioinformatics

ISSN: 1471-2105

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