Table 4 Annotation of 16 fungal genomes
From: Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function
Method | JGI/CAZya | Hotpep | dbCAN web | dbCAN download |
|---|---|---|---|---|
Annotated proteins | 3985 | 3534 | 6238 | 4490 |
True positives | - | 3084 | 3463 | 3057 |
False positives | - | 450 | 2775 | 1433 |
False negatives | - | 901 | 522 | 928 |
Sensitivity | - | 0.77 | 0.87 | 0.77 |
Precision | - | 0.88 | 0.56 | 0.68 |
F1 score | - | 0.82 | 0.68 | 0.72 |