Table 6 Number of near-native poses in 10 top-ranking poses obtained from ZDOCK program with 2Kp
From: AnkPlex: algorithmic structure for refinement of near-native ankyrin-protein docking
Feature | Number of near-native poses in 10 top-ranking poses | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
C1 | C2 | C3 | C4 | C5 | C6 | C7 | #PPTRN | U1 | U2 | #PPTEST | |
ZDock | 0 | 0 | 0 | 3 | 0 | 0 | 4 | 2 | 0 | 0 | 0 |
ZRankElec | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
ZRank | 0 | 1 | 6 | 7 | 1 | 1 | 8 | 6 | 0 | 0 | 0 |
ZRankSolv | 0 | 0 | 0 | 7 | 1 | 0 | 0 | 2 | 0 | 0 | 0 |
ZRankVdw | 0 | 0 | 4 | 0 | 0 | 3 | 1 | 3 | 0 | 0 | 0 |
E_vdw1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
E_elec1 | 0 | 0 | 0 | 0 | 0 | 7 | 0 | 1 | 0 | 0 | 0 |
E_vdw2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
E_elec2 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 1 | 0 | 0 | 0 |
E_sol | 0 | 0 | 0 | 9 | 1 | 0 | 0 | 2 | 0 | 0 | 0 |
E_RDock | 8 | 0 | 0 | 4 | 0 | 0 | 5 | 3 | 0 | 0 | 0 |