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Table 2 Comparison of D2_1 assembly results with different methods and different data set sizes

From: De novo assembly of highly polymorphic metagenomic data using in situ generated reference sequences and a novel BLAST-based assembly pipeline

 

Max length

Average length

Number of contigs

% of HBV genome recovered

Contigs that map to reference HBV genome

Contigs with HBV structural variants

BBAP/FD

998

263

52

100%

16

30

Velvet/Full

1102

303

13

19%

4

0

MetaVelvet/Full

1102

303

13

19%

4

0

SOAPdenovo/Full

934

340

8

14%

3

0

Genovo/Full

1352

395

60

44%

4

34

BBAP/PD

2924

692

6

100%

3

3

Velvet/Partial

2576

973

3

89%

3

0

MetaVelvet/Partial

2576

973

3

89%

3

0

SOAPdenovo/Partial

1723

390

10

95%

10

0

Genovo/Partial

2427

481

12

91%

4

7