Table 2 Terms used to name CDS in NCBI
From: Geminivirus data warehouse: a database enriched with machine learning approaches
Genera | CDS term NCBI | Varsani standard |
|---|---|---|
Betasatellite | “beta” or “c1” | betaC1 |
Alphasatellite | “alpha” or “rep” | alphaRep |
Begomovirus | “bv1” or “nsp” or “nuclear shuttle” | NSP |
Begomovirus | “bc1” or “bc2” or “mp” | MP |
All genera | “c1” or “ac1” or “rep” or al1 | Rep |
All genera | “c2” or “ac2” or “trap” or “al2” or “transcription activator protein” | TrAP |
All genera | “c3” or “ac3” or “ren” or al3 | REn |
All genera | “c4” or “ac4” or al4 | sd/p.sd |
All genera | “c5” or “ac5” | AC5 |
All genera | “v1” or “av1” or “cp” or “ar1” or “capsid protein” or “coat protein” | CP |
All genera | “v2” or “av2” or “pre-coat” or “precoat” or ar2 | pre-coat |
All genera | “v3” or “av3” | Reg |