Table 1 Summary of genome bins for AD microbiome dataset reconstructed with different binning algorithms
From: ICoVeR – an interactive visualization tool for verification and refinement of metagenomic bins
Binning algorithm | No genome bins | Completeness | Contamination | ||||||
|---|---|---|---|---|---|---|---|---|---|
Near (≥90%) | Substantial (≥70 to 90%) | Moderate (≥50 to 70%) | Partial (<50%) | Low (≤5%) | Medium (5 to ≤10%) | High (10 to ≤15%) | Very high (>15%) | ||
MetaBAT_1 | 34 | 8 | 7 | 5 | 14 | 31 | 3 | 0 | 0 |
MetaBAT_2 | 33 | 8 | 7 | 5 | 13 | 29 | 3 | 0 | 1 |
MyCC | 49 | 12 | 8 | 10 | 19 | 29 | 14 | 2 | 4 |
CONCOCT | 34 | 14 | 4 | 5 | 11 | 17 | 3 | 1 | 13 |
ICoVeRa | 31 | 11 | 8 | 10 | 2 | 30 | 1 | 0 | 0 |