From: LASSIE: simulating large-scale models of biochemical systems on GPUs
10 samples | 50 samples | 100 samples | 500 samples | 1000 samples | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
M×N | LSODA | LASSIE | Speed-up | LSODA | LASSIE | Speed-up | LSODA | LASSIE | Speed-up | LSODA | LASSIE | Speed-up | LSODA | LASSIE | Speed-up |
64×64 | 0.257 | 0.519 | 0.495 | 0.288 | 0.541 | 0.532 | 0.220 | 0.557 | 0.395 | 0.307 | 0.665 | 0.462 | 0.303 | 0.839 | 0.361 |
128×128 | 0.393 | 0.613 | 0.641 | 0.473 | 0.635 | 0.745 | 0.507 | 0.644 | 0.787 | 0.674 | 0.786 | 0.858 | 0.498 | 0.958 | 0.520 |
256×256 | 1.277 | 0.669 | 1.909 | 1.486 | 0.696 | 2.135 | 1.293 | 0.727 | 1.779 | 1.319 | 0.905 | 1.456 | 1.277 | 1.122 | 1.138 |
512×512 | 4.313 | 0.792 | 5.446 | 4.629 | 0.841 | 5.504 | 4.559 | 0.915 | 4.982 | 4.300 | 1.215 | 3.539 | 4.669 | 1.526 | 3.060 |
1024×1024 | 15.753 | 0.955 | 16.495 | 15.707 | 1.056 | 14.874 | 16.201 | 1.201 | 13.490 | 15.982 | 1.809 | 8.835 | 16.647 | 2.407 | 6.916 |
2048×2048 | 61.824 | 1.662 | 37.199 | 61.748 | 1.987 | 31.076 | 61.762 | 2.397 | 25.766 | 62.307 | 3.721 | 14.745 | 62.742 | 5.479 | 11.451 |
4096×4096 | 249.839 | 2.713 | 92.090* | 248.234 | 4.571 | 54,306 | 249.422 | 5.665 | 44.029 | 249.546 | 12.407 | 20.113 | 254.416 | 17.393 | 14.627 |
8192×8192 | NA | 14.134 | NA | NA | 26.051 | NA | NA | 38.058 | NA | NA | 101.91 | NA | NA | 129.755 | NA |